Original Articles Vol. 5 No. 4 (2025): Oct-Dec Open access
Clinical Features, Genetic Background, and Outcomes in Children with Mendelian Susceptibility to Mycobacterial Disease Diagnosed with Mycobacterial Tuberculosis Complex in Saudi Arabia: Case Series
- Paediatric Allergy and Immunology, King Fahad Medical City, Saudi Arabia.
- Paediatric Infectious Disease, King Fahad Medical City, Saudi Arabia.
- Paediatric Infectious Disease, Dr Suliman Fakeeh Hospital, Saudi Arabia.
- Paediatric Infectious Disease, King Salman Medical City, Saudi Arabia.
- General Paediatric, King Fahad Medical City, Saudi Arabia.
- Neonatology, King Fahad Medical City, Saudi Arabia.
- Microbiology, King Fahad Medical City, Saudi Arabia.
- Published
- August 20, 2025
- Pages
- 739-747
- Licence
- CC BY 4.0
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Abstract
Background: While live attenuated BCG immunization is generally well tolerated by children, those with certain immunodeficiencies, including Mendelian susceptibility to mycobacterial disease (MSMD) are at high risk for potential adverse reactions. These can range from regional lymphadenitis to fatal disseminated BCG infection (BCGosis). Here, we describe the clinical features, investigations, and underlying primary diseases of MSMD patients in Saudi Arabia.
Methods: This case series reports a retrospective descriptive analysis of patients under 14 years of age who were diagnosed with MSMD and developed disseminated BCGitis after vaccination, between January 2009 and December 2022.
Results: Fourteen patients with disseminated BCG disease were enrolled. The most common symptom was fever, which presented in 9 (64%) of the patients, while GIT symptoms were documented in 5 (35%). The most common signs were localized lymphadenopathy, observed in 8 patients (57.1%), and hepatosplenomegaly in 6 patients (42%). All patients had evidence of Mycobacterium tuberculosis complex on culture and the majority were PCR-positive. They were all treated with anti-tuberculosis medications; in addition, 3 patients started rhIFN-γ therapy. There were 2 deaths among the 14 cases (14.3%).
Conclusion: A thorough investigation for immunological defects is crucial in children who develop disseminated BCGitis, and early anti‐mycobacterial therapy is highly recommended in MSMD patients with BCG disease.
Keywords: BCG Vaccine, Child, Genetic Predisposition to Disease, Immunologic Deficiency Syndromes, Interferon-gamma, Mycobacterium Infections
Introduction
The Bacillus Calmette-Guérin (BCG) vaccine was developed in France, in 1908, by Albert Calmette and Camille Guérin. It was produced by in-vitro at-tenuation of Mycobacterium bovis strains, and first used in 1921 [1]. In 1974, the World Health Organization (WHO) included the vaccine in its Expanded Program of Immunization (EPI) [2]. While the BCG vaccine is well tolerated by most children, it carries the risk of adverse reactions, ranging from regional suppurative lymphadenitis to fatal disseminated BCG infection (BCGosis). The estimated incidence of such reactions is 1 to 3.4 per million, with a high case-fatality ratio reaching 50-71% of cases [3,4]. Patients with Mendelian susceptibility to mycobacterial disease (MSMD) and severe combined immunodeficiency (SCID), respectively, have the highest rates of complications and mortality [5], and early anti-mycobacterial therapy is therefore crucial in this cohort. However, management approaches to BCG vaccination complications remain a subject of debate. Here, we present cases of disseminated BCGitis, as well as the associated clinical and diagnostic investigations and underlying primary diseases, in a retrospective cohort of 14 MSMD patients at a single center in Saudi Arabia.
Materials and Methods
The study included data collected from January 2009 to December 2022, as part of larger study of Mycobacterial tuberculosis complex samples submitted to the Microbiology Department of a single tertiary center in Saudi Arabia. All samples were from patients under 14 years of age with confirmed genetic mutations for Mendelian susceptibility to mycobacterial disease. Data were collected from the Patient Electronic Medical Record System and the Microbiology Department’s data record using a questionnaire. To ensure anonymity, no patient identifiers were used. Variables included baseline information such as sex, age, nationality, clinical symptoms, underlying primary immunodeficiency conditions, treatment, and prognosis of BCGosis in the studied patients. This case series was approved by the Institutional Review Board (IRB) on 5 May 2020 (IRB log Number 20-271).
III. RESULTS
Demographics: We evaluated 14 patients with MSMD of whom 7 were male and 7 female (Table 1). Consanguinity was found in the families of 7 patients (50%). Primary immunodeficiency (PID) in child relatives was confirmed in 6 cases (42.8%), and clinically suspected in 2 (14.2%). Majority of patients had received a BCG vaccination at birth, under the previous Saudi national immunization plan. One patient had been vaccinated at 6 months, in accordance with the updated immunization plan, the exact timing of BCG vaccination for one patient is unknown. Post-vaccination Complications: Disseminated BCG infection was diagnosed in 12 of the patients (85.7%), while 6 (42.8%) developed generalized lymphadenopathy. The most common symptom was fever, in 9 patients (64.2%). Nine patients (64.2%) were screened for HIV, all were negative. PCR and Culture: Samples were collected via fine-needle aspiration or swabs, depending on the site of infection and clinical presentation (Table 2). All patients exhibited evidence of M. tuberculosis complex on culture, and PCR testing was positive in 11 (78.5%). As all isolates were resistant to pyrazinamide, the pathogens were most likely Mycobacterium bovis BCG strains. Management and Prognosis: All patients received anti-tuberculosis medications irrespective of their diagnosis (BCGitis or BCGosis), the duration of treatment ranging from 6 months to 1.5 years or more, depending on clinical response. In addition, 3 patients (21.4%) started rhIFN-γ therapy out of 14 patients, and 5 patient were followed up at our hospital until the time of publication or until their death. Among the remaining 9 patients, 7 were lost to follow-up (some were referred for transplant). It is worth mentioning that 2 of the 14 patients (14.2%) died. Immunological Screening and Genetic Analysis: The patients’ immunological screening results are detailed in Table 3. A lymphocyte subset count was ordered for 12 patients (85.7%), and was only within normal age-specific range in 5 of the 12. Serum immunoglobulin levels were measured in 11 of the 14 patients (78.5%), elevated IgA levels (above 1.2 g/l) were observed in 6 patients, and elevated IgM levels (above 1.6 g/l) were also found in 6 patients. Additionally, IgG levels exceeded the normal range (10.6 g/l) in 8 patients. Further details are provided in Table 3. The genetic analysis, conducted for all patients (Table 3), revealed an IL12B gene mutation in 6 out of 14 patients (42.8%). Three patients (P1, P12, and P14) had a STAT1 gene deletion affecting exons 3 and 4. One patient (P1) had a mutation affecting IL12RB1, and another (P2) had a homozygous mutation affecting IFNGR2. An interesting case (P11) was found to have a dual mutation affecting both interferon receptors IFNAR1 and IFNGR2. Only three patients (P1, P7, and P13) received interferon gamma therapy. The genetic testing reports for four patients (P6, P7, P9, P10) were difficult to retrieve.
Discussion
| Clinical features | Diagnosis | Other infections | Treatment duration | Follow-up |
|---|---|---|---|---|
| (Number of anti-TB drugs) | (Prognosis) | |||
| Fever, cough, lym- | Dissemi- | None | 1 year | 7 years to date |
| phadenopathy, de- | nated | (Initially 4, later 2) | (Alive, good) | |
| crease appetite, weight loss, hepatosplenomegaly | BCGosis | |||
| Fever, decreased | Dissemi- | Parotitis | 1 year | lost follow-up - |
| feeding/activity, lo- | nated | (Initially 4, later 2) | referred for | |
| calized lymphade- | BCGosis | transplant | ||
| nopathy, skin rash | (Alive, good) | |||
| Left axilliary swell- | BCGitis | - | 6 months; parents | lost follow-up |
| ing | stopped medication (Initially 2, later 2) | (Alive, good) | ||
| Fever, generalized | Dissemi- | Recurrent infec- | Current | 3 years to date |
| lymphadenopathy, | nated | tion, incl. Salmo- | (Initially 1, later 3) | (Alive, good) |
| BCG site symptoms | BCGosis | nella lymphadenitis and Salmonella isolated from stool | ||
| Generalized lym- | Dissemi- | Recurrent infec- | Current | 3 years to date |
| phadenopathy, | nated | tion, incl. Salmo- | (Initially 3, later 3) | (Alive, good) |
| BCG site symptoms | BCGosis | nella Bacteremia and Salmonella isolated from stool | ||
| Fever, night sweat- | Dissemi- | Chest infections | (Initially 2, later 4) | (Died) |
| ing, cough, SOB, | nated | |||
| generalized lymphadenopathy, GIT symptoms, abscess, hepatosplenomeg-aly | BCGosis | |||
| Diarrhea, decreased | Dissemi- | - | Unknown | Lost follow-up |
| appetite, weight | nated | (Initially 2, later 4) | (Alive, good) | |
| loss, generalized lymphadenopathy, ascites, hepatosplenomegaly | BCGosis | |||
| Fever, rash, GIT | Dissemi- | Pneumonia (influ- | Unknown | Lost follow up - |
| symptoms, hepato- | nated | enza & PCP), | (Initially 4, later 4) | referred for |
| splenomegaly; pa- | BCGosis | HLH | transplant. | |
| tient also had confirmed TB contact. | (Alive, good) | |||
| Fever, vomiting, di- | Dissemi- | - | Unknown | Lost follow-up - |
| arrhea, GIT symp- | nated | (Initially 2, later 4) | family insisted | |
| toms, generalized | BCGosis | on discharge | ||
| lymphadenopathy | (Died) | |||
| Fever, decreased | Dissemi- | Bacteremia | Unknown | Lost follow-up |
| feeding & activity, | nated | (Klebsilla) | (Initially unknown, | (Alive, good) |
| respiratory distress, lymphadenopathy, hepatosplenomeg-aly | BCGosis | later 4) | ||
| Localized lymphad- | BCGitis | Recurrent infec- | Unknown | Lost follow-up |
| enopathy, rash | tion - bacterial (S.viridins), Viral (CMV, HSV, RSV), and HLH | (Initially 3, later 3) | (Alive, good). | |
| Prolonged fever, | Dissemi- | RSV pneumonia | 1 year | 2 years to date |
| rash, diarrhea, lo- | nated | (Initially 4, later 3) | (Alive, good) | |
| calized lymphadenopathy | BCGosis | |||
| Decreased feeding, | Dissemi- | Salmonella iso- | Ongoing | 2 years to date |
| FTT, night sweat- | nated | lated from lymph | (Initially 4, later 4) | (Alive, good) |
| ing, generalized | BCGosis | node, H.pylori, | ||
| lymphadenopathy | chronic colitis | |||
| Fever, decreased | Dissemi- | Recurrent infec- | (Died) | |
| feeding, abdomen | nated | tions (viral, bacte- | (Initially 3, later 5) | |
| distension, raised | BCGosis | rial, fungal-Can- | ||
| liver enzymes, asci- | didemia), NTM | |||
| tes, hepatospleno-megaly, localized lymphadenitis | co-infection |
| Sample site | Percentage |
|---|---|
| Lymph nodes | (42.8%) |
| Gastric aspirate | (64.2%) |
| Peritoneum | (21.4%) |
| Sputum | (14.2%) |
| Pleural | (7.1%) |
| BCG site | (7.1%) |
| Bone marrow | (7.1%) |
| No. | Patient 1 | Patient 2 | Patient 3 | Patient 4 | Patient 5 | Patient 6 | Patient 7 |
|---|---|---|---|---|---|---|---|
| Age (mths)* | 5 | 3 | 11 | 12 | 24 | 11 | 12 |
| WBC | 8.3 (6-17.5) | 52 (6-17.5) | 13.4 (6-17.5) | 20.6 (6-17.5) | 11.5 (6-17) | 12 (6-17.5) | 15.7 (6-17.5) |
| ALC | 4.4 (4-13.5) | 15 (4-13.5) | 8.1 (4-10.5) | 9.5 (4-10.5) | 4.4 (3-9.5) | 3 (4-10) | 5 (4-10.5) |
| CD3 | 1.9 (2.5-5.6) | 10 (2.5-5.5) | ND | 5.4 (1.9-5.9) | 4 (2.1-6.2) | 0.8 (1.9-5.9) | 1.4 (1.9-5.9) |
| CD4 | 1.5 (1.8-4) | 7.4 (1.6-4) | ND | 4.1 (1.4-4.3) | 2.5 (1.3-3.4) | 0.6 (1.4-4.3) | 0.5 (1.4-4.3) |
| CD8 | 0.3 (0.59-1.6) | 2.56 (0.56-1.7) | ND | 1 (0.5-1.7) | 1.1 (0.6-2) | 0.2 (0.5-1.7) | 0.7 (0.5-1.7) |
| CD19 | 1.2 (0.43-3) | 3.59 (0.3-2) | ND | 3.4 (0.6-2.6) | 2 (0.72-2.6) | 2 (0.6-2.6) | 1.3 (0.6-2.6) |
| IGA g/l | 1.1 (0.081-0.84) | 1.5 (0.046-0.46) | ND | 1.3 (0.16-0.84) | 1.1 (0.4-1.23) | 1.5 (0.14-0.48) | 3.3(0.16-0.84) |
| IGM g/l | 2.4 (0.3-1.08) | 0.8 (0.24-0.98) | ND | 1.7 (0.41-1.49) | 2.3 (0.48-1.68) | 2.7 (0.4-1.49) | 2.4 (0.41-1.49) |
| IGG g/l | 13.7 (1.72-8.14) | 13.6 (1.7-5.8) | ND | 20.5 (2.9-10.6) | 23 (4.2-10.5) | 14.8 (2.9-10.6) | 20 (2.9-10.6) |
| HIV | Negative | ND | ND | Negative | Negative | Negative | Negative |
| Gene | IL12RB1 | STAT1 gene dele- | IL12B | IL12B | IL12B | IL12 deficiency | IL12 deficiency |
| tion (exon 3&4) | details not found | details not found | |||||
| Mutation | c.264C>G | - | c.320dupA | c.320dup | c.320dup | - | - |
| Protein | p.Tyr88X | - | p.K107FS | p.E108Gfs*8 | p.E108Gfs*8 | - | - |
| Mutation Status | - | - | Heterozygous | Homozygous | Homozygous | - | - |
| IFNγ treat-ment | Yes | No | No | No | No | No | Yes |
| No. Patient 8 Patient 9 Patient | 10 Patient 11 Patient 12 Patient 13 Patient 14 |
|---|---|
| Age (mths)* 2 20 12 | 2 12 36 3 |
| WBC 35 (6-17.5) 10.8 (6-17) 18.2 (6-17.5) | 38.3 (6-17.5) 47 (6-17.5) 15.4 (5.5-15.5) 33.1 (6-17.5) |
| ALC 15.6 (4-13.5) 5.5 (3-9.5) 7.5 (4-10.5) | 16.9 (4-13.5) 10.2 (4-10.5) 3.9 (2-8) 5.6 (4-13.5) |
| CD3 7.5 (2.5-5.5) ND 1.5 (1.9-5.9) | 5.2 (2.5-5.5) 6.4 (1.9-5.9) 1.8 (1.4-3.7) 4.2 (2.5-5.5) |
| CD4 4.8 (1.6-4) ND 1.2 (1.4-4.3) | 1.1 (1.6-4) 4.5 (1.4-4.3) 1 (0.7-2.2) 2.6 (1.6-4) |
| CD8 2.9 (0.56-1.7) ND 0.4 (0.5-1.7) | 3.6 (0.56-1.7) 1.8 (0.5-1.7) 0.6 (0.49-1.3) 1.3 (0.56-1.7) |
| CD19 5.7 (0.3-2) ND 0.08 (0.6-2.6) | 2.3 (0.3-2) 2.2 (0.6-2.6) 1.3 (0.39-1.4) 1.3 (0.7-1.6) |
| IGA g/l ND ND <0.2 | (0.16-0.84) 0.4 (0.028-0.47) 1.1 (0.16-0.84) 4.2 (0.22-1.59) 0.98 (0.046-0.46) |
| IGM g/l ND ND <0.1 | (0.41-1.49) 0.9 (0.17-1.05) 1 (0.41-1.49) 1.9 (0.47-2) 1.56 (0.24-0.98) |
| IGG g/l ND ND 3.1 (2.9-10.6) | 6.7 (2.06-6) 20 (2.94-10.6) 22.1 (4.4-11.3) 8.3 (1.7-5.8) |
| HIV Negative Negative ND | ND Negative Negative ND |
| Gene IFNGR2 (IL12B) details (IL12B) | details not 1) IFNAR1 (deletion) STAT1 gene IL12B STAT1 gene dele- |
| not found found | 2) IFNGR2 (single deletion (exon tion (exon 3&4) nucleotide deletion) 3&4) |
| Mutation - - - | 1) c.1671_1821del - - - 2) c.798delT |
| Protein p.Y235X - - | 1) p.*557Glext*46 - p.(Glu108Glyfs*8) - 2) p.C266fs |
| Mutation Homozygous - - Status | Homozygous Homozygous Homozygous Homozygous |
| IFNγ treat- No No No ment | No No Yes No |
| *Age at first immunological screening (in months), P: | Patient, ND: not done, NR[A1]: Normal range based on age-related reference range from |
THE HARRIET LANE HANDBOOK Twenty-first edition - authors: Helen K. Hughes, Lauren K. Kahl.
V. CONCLUSION
MSMD remains challenging to diagnose, particularly because the presenting symptoms are usually delayed. In communities with a high consanguinity rate, it is worth evaluating the family history of PID when administering routine vaccinations. Moreover, in children with disseminated BCGitis after BGC vaccination, a thorough investigation for immunological defects is crucial. Our study provides further insight about MSMD in TB-endemic countries, where BCG vaccination remains necessary despite a high prevalence of inherited diseases, including primary immunodeficiencies. Further studies would add value by investigating the effect of delayed BCG vaccination on the incidence of BCG-related complications.
VI. CONFLICT OF INTEREST The authors declare no conflicts of interest.
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- August 20, 2025
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- © 2025 Maram Alotaiby, Abdulrahim Abdullahi, Omar Bagaber, Waad Alharthi, Doaa Alabbas, Eman Badyee, Mohammad Almasoud, Nada Abutaleb, Mofarah Alzahrani, Dayel Alshahrani. Published open access under CC BY 4.0.
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